Welcome to spacer's documentation!
===================================

.. image:: _static/model.png
   :align: center
   :width: 600px
   :alt: spacer model overview

**spacer** (Spatial Analysis of Cellular Engagement and Recruitment) is a multi-instance deep learning framework 
developed to elucidate the molecular and spatial determinants of cellular recruitment and engagement 
within tissue microenvironments.

For installation instructions and getting started examples, please see below.

.. note::

   This project is under active development.  
   For questions, feature requests, or contributions, please visit the 
   `spacer GitHub repository <https://github.com/yaober/spacer>`_.

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Documentation Overview
----------------------

.. toctree::
   :maxdepth: 2
   :caption: Main Sections

   installation
   data_preparation
   quick_start
   build_model