Full User Manual

This guide provides a minimal example to run single mode spacer with your own spatial transcriptomics dataset.

Please run these examples interactively in a Jupyter Notebook:

• Spacer training Notebook
• Load reference gene list
• ── Option A: single AnnData file ───────────────────────────────────────────
• ── Option B: multi-sample CSV ───────────────────────────────────────────────
• SPACER Predict Notebook